Journal of Data Mining in Genomics & Proteomics

Roossinck MJ, Martin DP, Roumagnac P (2015) Plant virus metagenomics: Advances in virus discovery. Phytopathology 105: 716-727.

Roy A, Shao J, Hartung JS, Schneider W, Brlansky RH (2013) A case study on discovery of novel Citrus Leprosis virus cytoplasmic type 2 utilizing small RNA libraries by Next Generation Sequencing andbioinformatic analyses. J Data Mining Genomics Proteomics 4: 2153-0602.

Designing robust watermark barcodes for multiplex long-read sequencing.

Role of Bioinformatics in Various Aspects of Biological Research: A Mini Review

Laver TW. Evaluating Metagenomic Quantifications from Next-Generation Sequencing Data.

McCoy RC, Taylor RW, Blauwkamp TA, Kelley JL, Kertesz M. Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve.

Konnick EQ, Yeung C, Wu D (2016) DNA in Neoplastic Disease Diagnosis. Reviews in Cell Biology and Molecular Medicine.

Ardui S, Race V, Zablotskaya A, Hestand MS, Esch H,et al. (2017) Detecting AGG Interruptions in Male and Female FMR1 Premutation Carriers by Single‐Molecule Sequencing. Human mutation 38: 324-331.

Rudewicz J, Soueidan H, Uricaru R, Bonnefoi H, Iggo R,et al. (2016) MICADo–Looking for Mutations in Targeted PacBio Cancer Data: An Alignment-Free Method. Frontiers in Genetics 7.

Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer Voting.

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.

SThe present and future of de novo whole-genome assembly.

Will Benchtop Sequencers Resolve the Sequencing Trade-off in Plant Genetics?.

Kinetics of genetic variation of the Mycoplasma genitalium MG192 gene in experimentally infected chimpanzees.

Polymerase specific error rates and profiles identified by single molecule sequencing.

Towards better precision medicine: PacBio single-molecule long reads resolve the interpretation of HIV drug resistant mutation profiles at explicit quasispecies (haplotype) level.

Telling plant species apart with DNA: From barcodes to genomes.

Extensive variation and rapid shift of the MG192 sequence in Mycoplasma genitalium strains from patients with chronic infection.

Next generation multilocus sequence typing (NGMLST) and the analytical software program MLSTEZ enable efficient, cost-effective, high-throughput, multilocus sequencing typing.

Witek K, Jupe F, Witek AI, Baker D, Clark MD,et al. (2016) Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing. Nature biotechnology.