Journal of Data Mining in Genomics & Proteomics

2^nd International Conference on Big Data Analysis and Data Mining

November 30-December 01, 2015 San Antonio, USA

Posters-Accepted Abstracts

• Selecting training documents for better learning

  Abdul Mohsen Algarni

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• Wafer yield prediction based on virtual metrology process parameters in semiconductor manufacturing

  Wan Sik Nam

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• The effects of Google trends on tourism industry in South Korea

  David Sung and Sang-Hyun Park

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• A robust coefficient of variation control chart

  Ali Muzaffar1 and Muhammad Rizwan Iqbal2

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• A comparison of data storage technologies for remote sensing cyber-infrastructures

  Rajasekar Karthik1 and Pranab Kanti Roy Chowdhury2

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• Neural network simulation for principal component analysis case of supervised learning

  Donking Kialanda Nsidiovova, Simon Ntumba Badibanga and Eugène Mbuyi Mukendi

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• Schedule optimization for big data processing on cloud

  Ibrahim Abaker Targio Hashem, Nor Badrul Anuar and Abdullah Gani

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• Field scale simulation study of miscible water alternating CO2 injection process in fractured reservoirs

  Hooman Fallah

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• Digging equipment simulation and selection

  Kaiwan

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• Algorithm for information retrieval optimization

  Kehinde Kayode Agbele

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• Virtual screening of natural compounds that can inhibit HCV

  Saima Kashif1, Farzana Yasmin1, Sadaf Naeem2 and Syed H Ali3

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• Improving similarity search in irregular time-series using dynamic time warping

  Arvind Pandiyan, Varun V Shenoy, Poojitha Karlapalem and Dinkar Sitaram

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• Innovative techniques for improving web usage mining

  Selvarani Selvam

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• Virtual screening of phytochemical constituents from traditional Indonesian herbs for inhibitors of aldose reductase

  Sadaf Naeem1, Peter J Hylands2 and David J Barlow2

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• On-line/real time compatibility of COBAC analysis, QSPR, QSAR and SBGN big data mining as a novel tool for physiochemical prognostics in the biomedicine-assisted screening and experimental toxicology and allergology

  Orehov F C and Gradov O V

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• Domain based opinion lexicon generation for sentiment analysis of the academic resources

  Archana Shukla

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• Benchmarking regression algorithms for income prediction modeling

  Azamat Kibekbaev and Ekrem Duma

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• D-MMA-Data mining using self-organizing feature maps in earthquake prediction

  Mostafa Allameh Zadeh

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• Effective web data extraction

  Yogita Rahulsing Chavan

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• Big data application: Opportunities and challenge

  Sushila Madan

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• Cognitive models for emotion recognition: Inverse big data problems and deep learning

  Roman Tankelevich

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• An experimental study of parallel multi-objective genetic algorithms

  Bhabani Shankar Prasad Mishra

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• Web mapping applications: Urban land uses in the city of Kirkuk-Iraq (zone Hay Askari- case study)

  Ahmed M Jihad Al-Kubaisi1 and Najib M Al-Zaidi2

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• A model for predicting ischemic stroke using data mining algorithms

  Balar Khalid

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• Data mining in banking and finance: A case study of BICEC

  Arrey Yvonne Tabe

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• Innovated interaction screening for high-dimensional nonlinear classification

  Daoji Li

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• The effects of square root transformation on a gamma distributed error component of a Multiplicative Error Model (MEM)

  Dike O A1 and Ohakwe J2

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• Feature selection using an effective dimensionality reduction technique

  M V Siva Prasad

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• Mining big data: Current status, and dynamic energy management using big data analytics

  Podili V S Srinivas and Ch Mallikarjuna Rao

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• Big data for research and development

  Alex V Vasenkov

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• Mining of facial features for gender and expression classification

  Mallikarjuna Rao G

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• Segmentation based clustering for knowledge discovery from spatial data

  Ch Mallikarjuna Rao

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• Building a minimal cell-The JCVI design-build-test cycle for synthetic cells

  Clyde Hutchison

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• Genomic analysis of bacteriophages

  Roger Hendrix

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• The current state of comparative genomics and pharmacogenomics, and the application of the NCI-60 resources and CellMiner tools to these problems

  William C. Reinhold

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• A rare mutation of CACNA1C in a patient with bipolar disorder, and decreased gene expression in brain associated with a bipolar-associated common SNP of CACNA1C

  Elliot S. Gershon and Chunyu Liu

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• Genetic polymorphisms associated with high risk to develop dementia in subject with TBI history

  Giulio Maria Pasinetti, Ke Hao and Samara Levine

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• Brain expression QTLs and GWAS signals of psychiatric diseases

  Chunyu Liu

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• Heterogeneity in speech sound disorders: New findings in multigenerational families

  Beate Peter and Wendy Raskind

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• Understanding circadian transcriptional rhythms using next-generation sequencing

  Michael E. Hughes

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• Genome wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer

  Sanchari Bhattacharyya

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• Investigating mechanisms of genome maintenance through protein and chromatin interactions

  Sudha Sharma

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• Breast cancer mutations linked to viral infections

  Bernard Friedenson

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• Wnt5a/beta-catenin signaling pathway as a new molecular target for developing therapeutic strategies for keloid

  M. Ghazizadeh, S. Igota, S. Egawa and M. Tosa

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• Ranking of prokaryotic genomes to reveal evolutionary factors

  Alexander Bolshoy

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• Phylogeny of adaptive immunity in jawless vertebrates

  Sabyasachi Das

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• Genome sequencing reveals a wide variation of recombination events in eukaryote

  Dacheng Tian

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• Retrotransposons as the key for the evolution of genomic imprinting in mammals

  Shunsuke Suzuki

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• Evolutionary dynamics of human autoimmune disease genes and malfunctioned immunological genes

  Soumita Podder

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• Receptor tyrosine kinases fall into distinct classes based on their inferred signaling networks

  Alejandro Wolf-Yadlin

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• Epithelial-mesenchymal transition (EMT) linked with stem-cell properties

  Yasuo Iwadate

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• Genomic determinants of congenital mental retardation assorted through linkage analysis with STR markers in consanguineous families

  Muhammad Yasir Zahoor, Shaheen N. Khan, Hans van Bokhoven and S. Riazuddin

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• ENCODE recombination and longevity

  Gil Atzmon

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• Mapping genetic networks that dictate the mammalian liver phenotype using whole genome microarrays

  Gary A. Bulla, Sharon Lozada, Adele L. Dust, Caitlin M. Alymer, Jeffrey L. Kirkewich and Arnold B. Estanda

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• Functional screening identifies Siah2 as a novel circadian clockwork ubiquitin ligase

  Jason P. DeBruyne

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• Deep sequencing plant defense responses

  Vincent Klink and Giselle Thibaudeau

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• Functional consequences of genomic abnormalities

  Evica Rajcan-Separovic

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• Evolutionary studies of some species belonging to leguminosae family based on rbcl gene

  Sagar Patel and Hetalkumar Panchal

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• Olea europaea (olive) leaf extract alters miRNA expression in GBM cell lines and GBM stem cells

  Gulcin Tezcan, Berrin Tunca, Unal Egeli, Gulsah Cecener, Ahmet Bekar, Ferah Budak, Saliha Sahin, Cevdet Demir, Hulusi Malyer, Hasan Kocaeli and Ozgur Taskapilioglu

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• Cancer pharmacogenomics: Discovery science and translational science

  Liewei Wang

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• Pharmacogenomics of breast cancer endocrine therapy

  Richard Weinshilboum

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• Pharmacogenomics of AML: A road towards personalized medicine

  Jatinder Lamba

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• FADS polymorphisms and plasma levels of omega-3 fatty acids

  Michael H. Davidson

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• Whole-genome and epigenome sequencing identified novel epstein-barr virus-associated functional mutations and epigenetic gene silencing in gastric cancer

  Qiaoyi Liang

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• Current and up-coming analysis tools for the NCI-60 in CellMiner: Resources for data integration and systems pharmacology

  William C. Reinhold

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• Algorithm of ancestral gene lengths reconstruction

  Alexander Bolshoy

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• Quantitative frame analysis and gene discovery in prokaryote genomes

  Luciano Brocchieri

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• Matrix algorithms for genome evolution (MAGE)

  Alexei Fedorov

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• From genomics to spatio-temporal organization of cellular processes: What can confocal microscopy tell us about the mechanism of DNA repair and formation of chromosomal translocations?

  Martin Falk

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• Enabling drug discovery in the cloud with comparative genomics

  Gerald J. Wyckoff

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• Utilizing functional genomics and systems biology to understand perinatal lung maturation and associated diseases

  Yan Xu

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• LYNX-a systems biology platform for integrative medicine

  Natalia Maltsev

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• GSV/mGSV: Web-based genome synteny visualization tools for customized data

  Qunfeng Dong

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• Ensemble regulation of large gene systems

  Istvan Ladunga, Matyas F. Cserhati, Jiang Shu and Donald P. Weeks

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• The inflammation-modulatory networking activities of medicinal phytochemicals: Revealed by omics studies

  Ning-Sun Yang

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• Highly rearranged and size-variable chloroplast genomes in conifer II clade (cupressophytes): Selection toward shorter intergenic spacers

  Shu-Miaw Chaw and Chung-Shien Wu

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• Cloning and expression profiling of polycomb gene, RETINOBLASTOMA-RELATED (RBR) from tomato Solanum lycopersicum L.

  Zainab M. Almutairi

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• The relationship between polymorphisms of ADRB2 gene and wheezing illness in 0-5 year children

  Hai-Hao Su

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• Identification of hot-spot regions of N-type Ca2+ channel receptor by its homology model and molecular dynamics based blocker design

  C. Gopi Mohan

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• Proteomic analysis of tumor fluid in epithelial ovarian cancer: A new strategy for identifying tumor markers

  Poersch A, Sousa L. O, Faca V. M, Greene L. J and Reis F. J. C

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• Whole genome sequencing and phylogeny for members of the microalgae genus Prototheca

  Aren Ewing, Shane Brubaker, Aravind Somanchi, George Rudenko, Esther Yu, Nina Reyes, Karen Espina, Leon Xing, Riyaz Bhat Arthur Grossman and Scott Franklin

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• Systematic investigations of plastid genomes and nuclear integrants of plastid DNA in cupressophytes (Conifers II)

  Chih-Yao Hsu, Chung-Shien Wu, Hui-Ling Hsieh and Shu-Miaw Chaw

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• Genetic analysis and replication of QTL effects on chicken body weight using a multi-locus introgression line

  Muhammad Ahsan, Weronica E. K, Stefan Marklund, Mats Pettersson, Ashok Ragavendran, Paul Siegel, William Muir and Orjan Carlborg

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• Chitinase-3-like protein1 (YKL-40) as biomarker in serum of Egyptian breast cancer females

  Zeiad Gad

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• Genomic profiles and CRTC1-MAML2 fusion distinguish different subtypes of mucoepidermoid carcinoma

  Kowan Ja Jee, Marta Persson, Kristiina Heikinheimo, Fabricio Passador-Santos, Katri Aro, Sakari Knuutila, Edward W Odell, Antti Mäkitie, Kaarina Sundelin, Goran Stenman and Ilmo Leivo

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• A genome-wide insight into the molecular events accompanying the emergence and the expansion of a multidrug-resistant mycobacterium tuberculosis outbreak strain

  Helmi Mardassi, Amine Namouchi, Neira Dekhil and Brigitte Gicquel

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• Insights into the biology of Mycoplasma meleagridis as revealed by its whole genome sequence

  Boutheina Ben Abdelmoumen Mardassi, Elhem Yacoub, Pascal Sirand-Pugnet and Alain Blanchard

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• Ligase chain reaction as a modality for the detection of point mutation in the precore region of HBV related HCC cases: A study from Northern India

  Abdul Malik, Abdulmajeed Albanyan and Premashis Kar

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• A novel splice variant of G-substrate in humans? Potential implications for animal models of Parkinsonâ??s disease

  Alastair Aitken, Maa Vigbedor, Sebastian Beck, Nicola Houston, Helen Falconer and Mayank Dutia

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• KAOS-Kinases automated outlier searcher for cancer drugs target discovery

  Angelo Nuzzo

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• Identification of vaccine target through CTL epitope prediction and structure modeling of capsid protein from dengue virus 3 of Indian isolates

  A. G. Ingale

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• microRNA as blood-based biomarkers

  B. Nelson Chau

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• Over-expression of c/ebpα gene in bovine muscle stem cell stimulates adipogenesis

  Camus Adoligbe, Yifan Huangfu, Linsen Zan and Hong Wang

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• Novel epigenetic and epitranscriptomic in cancer and adventures in personalized medicine

  Christopher E. Mason

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• Caring for patients with metabolic disorders from newborn screen to year one: Provider workload, workflow, and issues for the medical genetics workforce

  Robert McGrath

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• Regulatory mechanisms of active genome repair

  Sukesh R. Bhaumik

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• Functional genomics and reverse vaccinology approach to identify vaccine candidates against influenza virus

  Bhawna Rathi

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• Phenomics and the challenge of full life span, 3D, whole organism imaging at cell resolution

  Keith C. Cheng

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• The human gene connectome server - An online tool for prioritizing disease-causing gene variants by biological distance

  Yuval Itan

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• The metabolic phenotype guiding the discovery of treatable intellectual disability genes

  Clara Van Karnebeek, Salvarinova R, Shyr C, Sinclair G, Waheed A, Sly W, Wasserman W and Stockler S

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• Human genomics: A framework for education and reduction to practice

  Corey Nislow

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• SSRI response biomarkers: Lessons from genome-wide transcriptomic profiling of human lymphoblastoid cell lines

  David Gurwitz

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• From pharmacogenetics to personalized medicine: Regulatory perspectives and implications for Latin American countries

  Diadelis Remirez Figueredo

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• Global analyses of post-transcriptional gene regulatory networks in tissue development

  Donny D. Licatalosi

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• Background for Anopheles mosquitoâ??s genomics studies in Colombia

  Doris A. Rosero Garcia

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• Cytotaxonomic studies of three tropical ornamental aroids

  Emmanuel Jonah Kalu, Obi Steven Udengwu and Anulika Mercy Kanu

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• Using genomic technologies to elucidate modifiers in fragile X syndrome

  Emmanuel Peprah

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• An integrated rapid on-site system for forensic STR genotyping analysis

  Frederic Zenhausern, Jianing Yang, Cedric Hurth, Carla Brooks, Stan Smith, Brett Duane, Alan Nordquist and Matt Barrett

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• Identification of stroke-related target genes with high clinical impact

  George Trendelenburg

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• Genomic scale sorting and characterization of MITEs in the entangled mobilome

  Guojun Yang

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• Mitochondrial genome, transcriptome and editome in the angiosperm Silene vulgaris

  Helena Storchova and James D. Stone

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• Characterization of CYP76AH4 clarifies plant phenolic diterpenoid biosynthesis

  Jiachen Zi and Reuben J. Peters

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• RNA-Seq characterization of spinal cord injury transcriptome: A resource for understanding the pathology at the systems level

  Jiaqian Wu, Kenian Chen, Shuyun Deng, Hezuo Lu and Qilin Cao

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• Front end proteomic separations for top-down mass spectrometry analysis of low microgram samples

  John C. Tran

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• Etiology of breast cancer in patients with earlier reproductive surgeries

  Kaiser Jamil, Hajira S. Fatima and Suryanarayana Raju

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• Pancreatic cancer genetics: Fine-mapping and functional characterization of the chr5p15.33/ CLPTM1L/TERT risk locus

  Laufey Amundadottir

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• Rethinking the nature of â??genotypeâ?: Indexing by copy number variation reveals previously undiscovered genome-wide significant SNP associations in expression quantitative trait loci analysis

  Lea K. Davis

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• Reprogramming fibroblasts towards cardiomyocyte-like cells

  Li Qian

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• Radiation-induced transcriptional modulation of microRNA

  M. Ahmad Chaudhry

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• Genetics of early growth and metabolic disorders

  Marjo-Riitta Jarvelin

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• Comparative genomics: From genome sequences to genome biology

  Michael Y. Galperin

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• Family history, genetics services, and cancer risk perception at Brazilian unified health system

  Milena Floria-Santos

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• GWAS and EWAS go together: Implication in risk assessment of cancer

  Mukesh Verma

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• De novo genome sequencing of dematiaceous fungus: A gateway to understand the biology of poorly studied fungi

  Ng Kee Peng

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• Integration of omic technologies and biokinetics for the development of improved human based test systems for nephrotoxicty

  Paul Jennings

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• Evolution and interaction complexity in phosphotyrosine signaling may contribute to cellular heterogeneity

  Piers Nash

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• Comprehensive analysis of global gene expression and microRNA profile in coronary artery disease

  Prathima Arvind

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• Transposable elements in insects

  R. D. Fernandez-Medina, C. J. Struchiner and J. M. Ribeiro

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• Analysis of short-read data from NCBI SRA and CGHub/TCGA using HIVE-XLD: Evaluation of the effects of non-synonymous variation in the Human proteome

  Raja Mazumder and Vahan Simonyan

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• Epilepsy as a pyridoxine-dependent condition: Familial disorders of vitamin B6 metabolism

  S. Dolina, D. Margalit, E. Pressman and A. Rabinkov

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• Long non-coding RNAs, â??the dark matter of the genomeâ?, as powerful regulators of cellular fate and reprogramming

  Saba Valadkhan, Fereshteh Jahaniani, Bing Zhang, Farshad Niazi and Lalith Gunawardane

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• Mapping membrane protein signal transduction using synchrotron induced hydroxylradical footprinting: A GPCR study

  Sasa Bjelic

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• Pharmacogenomics-guided approach to minimize adverse drug reactions

  Shu-Feng Zhou

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• Multilayered molecular profiling supported the monoclonal origin of metastatic renal cell

  Song Wu, Xiaojuan Sun, Yi Huang, Shengjie Gao and Zhiming Cai

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• Computational predictive analyses of the substrate and drug specificities for 500 human protein kinases for assessment of genetic mutations

  Steven Pelech

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• Implementation of pharmacogenetics approaches at the NIH hospital

  Tristan Sissung, Barry R. Goldspiel, Willy A. Flegel, Gary DiPatrizio, Sharon D. Adams, Scott Penzak1, Les Biesecker3, Thomas Fleisher, Jharana J. Patel, David Herion, William D. Figg, Juan Lertora1 and Jon W. McKeeby

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• A Web-based tool for access to gene expression, microRNA transcript levels, the activity of 20,602 compounds, and their pattern comparisons for the NCI-60

  William C. Reinhold

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• Our exome experience: Informatics, technology and discoveries

  Xiaowu Gai

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• Identification of clinically useful genomic and epigenomic variants

  Xiong Momiao and Long Ma

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• Molecular phylogenetics, barcoding and, speciation genetics: A perspective from mitogenomics

  Yuri Ph. Kartavtsev

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• Proteomic analysis of oral carcinogenesis by using gel-based and gel-free quantitative approaches

  Zhi Wang, Kai Su, Sijia Zhao, Da Ma, Xiaobing Chen and Peixi Liao

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• Intra-cervical misoprostol for the management of early pregnancy failure

  Abdulrahim A. Rouzi, Nisma Almansouri, Nawal Alsenani and Nabil Bondagji

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• A semi-rational approach to obtain a thermostable ionic liquid tolerant bacterial laccase through Ï?-type interactions

  F. Ghazi, B. Dabirmanesh, Q. Dabirmanesh and K. Khajeh

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• Myostatin signals through Pax7 to regulate myoblast proliferation and differentiation via differential pathways in Texel and Ujumqin sheep

  Hang-Xing Ren, Li Li, Cai-Hong Wei, Hong-Wei Su, Jian Lu, Xiao-Ning Zhang, Li Zhang, Guo-Bin Lu, Wen-Zhong Liu4 and Li-Xin Du

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• Computational epigenetic profiling of CpG islets in methylenetetrahydrofolate reductase

  Keat Wei Loo, Lyn Griffiths, Emily Camilleri and Siew Hua Gan

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• Construction of the interaction network of muc13 and differentially expressed genes in piglets diarrhea and prediction of related pathways

  Lu Fu-zeng, Chu Xiao-hong, Xu Ru-hai, Dai Li-he and Hu Jin-ping

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• Association of beta 2 adrenoceptor gene polymorphism in Malaysian hypertensive subjects

  Komara Makanko, R. Vasudevan, Ismail Patimah, Abu Bakar Suhaili, Pishva Syeed Reza and Heidari Farzad

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• Commitment of Plasmodium falciparum to gametocytogenesis in samples from Ghanaian malaria patients and the identification of antigen(s) on the surface of gametocyte-infected erythrocytes

  Andrea Twumwaa Arku

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• DNA barcoding-Key to genetic identity

  Mark Levine

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• Cloning, recombinant expression in Escherichia coli and DNA binding properties of Datura metel L. Myb transcription factor

  Priya Arora, P. K Rajvanshi and C. Jayabaskaran

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